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Python for Bioinformatics
Programming knowledge is often necessary for finding a solution to a biological problem. Based on the author's experience working for an agricultural biotechnology company, Python for Bioinformatics helps scientists solve their biological problems by helping them understand the basics of progra...
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| Format: | Printed Book |
| Izdano: |
Boca Raton
CRC Press
2010
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| Serija: | Chapman and Hall/CRC mathematical & computational biology series.
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| Teme: |
Sadržaj:
- Introduction
- First steps with python
- Basic programming: data types
- Programming: flow control
- Dealing with files
- Code modularizing
- Error handling
- Introduction to object orienting programming (OOP)
- Regular expressions
- Introduction to biopython
- Web applications
- XML
- Python and databases
- Collaborative development: version control
- Sequence manipulation in batch
- Web application for filtering vector contamination
- Searching for PCR primers using primer3
- Calculating melting temperature from a set of primers
- Filtering out specific fields from a genbank file
- Converting XML BLAST file in HTML
- Infering splicing sites
- DNA mutations with restrictions
- Web server for multiple alignment
- Drawing marker positions using data stored in a database.