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Functional proteomics : methods and protocols /

Bibliographic Details
Other Authors: Schaeffer-Reiss, Christine, Thompson, Julie D., Ueffing, Marius
Format: Printed Book
Language:English
Published: Totowa, NJ : Humana Press, c2008.
Series:Methods in molecular biology (Clifton, N.J.) ; 484.
Subjects:
Table of Contents:
  • A brief summary of the different types of mass spectrometers used in proteomics / Christine Schaeffer-Reiss
  • Experimental setups and considerations to study microbial interactions / Petter Melin
  • Plant proteomics / Eric Sarnighausen and Ralf Reski
  • Methods for human CD8+ T lymphocyte proteome analysis / Lynne Thadikkaran ... [et al.]
  • Label-free proteomics of serum / Natalia Govorukhina, Peter Horvatovich, and Rainer Bischoff
  • Flow cytometric analysis of cell membrane microparticles / Monique P. Gelderman and Jan Simak
  • Exosomes / Joost P.J.J. Hegmans, Peter J. Gerber, and Bart N. Lambrecht
  • Toward a full characterization of the human 20S proteasome subunits and their isoforms by a combination of proteomic approaches / Sandrine Uttenweiler-Joseph ... [et al.]
  • Free-flow electrophoresis of the human urinary proteome / Mikkel Nissum and Robert Wildgruber
  • Versatile screening for binary protein-protein interactions by yeast two-hybrid mating / Stef J.F. Letteboer and Ronald Roepman
  • Native fractionation : isolation of native membrane-bound protein complexes from porcine rod outer segments using isopycnic density gradient centrifugation / Magdalena Swiatek-de Lange, Bernd Müller, and Marius Ueffing
  • Mapping the signaling pathways by functional interaction proteomics / Alex von Kriegsheim, Christian Preisinger, and Walter Kolch
  • Selection of recombinant antibodies by eukaryotic ribosome display / Mingyue He and Michael J. Taussig
  • Production of protein arrays by cell-free systems / Mingyue He and Michael J. Taussig
  • Nondenaturing mass spectrometry to study noncovalent protein/protein and protein/ligand complexes : technical aspects and application to the determination of binding stoichiometries / Sarah Sanglier ... [et al.]
  • Protein processing characterized by a gel-free proteomics approach / Petra Van Damme ... [et al.]
  • Identification and characterization of N-glycosylated proteins using proteomics / David S. Selby ... [et al.]
  • Data standards and controlled vocabularies for proteomics / Lennart Martens, Luisa Montecchi Palazzi, and Henning Hermjakob
  • The PRIDE proteomics identifications database : data submission, query, and dataset comparison / Philip Jones and Richard Côté
  • Searching the protein interaction space through the MINT database / Andrew Chatr-aryamontri ... [et al.]
  • PepSeeker : mining information from proteomic data / Jennifer A. Siepen, Julian N. Selley, and Simon J. Hubbard
  • Toward high-throughput and reliable peptide identification via MS/MS spectra / Jian Liu
  • MassSorter : peptide mass fingerprinting data analysis / Ingvar Eidhammer, Harald Barsnes and Svein-Ole Mikalsen
  • Database similarity searches / Frédéric Plewniak
  • Protein multiple sequence alignment / Chuong B. Do and Kazutaka Katoh
  • Discovering biomedical knowledge from the literature / Jasmin Šaríc, Henriette Engelken, and Uwe Reyle
  • Protein subcellular localization prediction using artificial intelligence technology / Rajesh Nair and Burkhard Rost
  • Protein functional annotation by homology / Raja Mazumder, Sona Vasudevan, and Anastasia N. Nikolskaya
  • Designability and disease / Philip Wong and Dmitrij Frishman
  • Prism : protein-protein interaction prediction by structural matching / Ozlem Keskin, Ruth Nussinov, and Attila Gursoy
  • Prediction of protein interaction based on similarity of phylogenetic trees / Florencio Pazos ... [et al.]
  • Large multiprotein structures modeling and simulation : the need for mesoscopic models / Antoine Coulon, Guillaume Beslon, and Olivier Gandrillon
  • Dynamic pathway modeling of signal transduction networks : a domain-oriented approach / Holger Conzelmann and Ernst-Dieter Gilles.